PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0267
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 24997.6 Da    PI: 8.2035
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0267genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.8e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+iifs tgkl+e++s
  Gh_D06G0267  9 KKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFAS 59
                 68***********************************************86 PP

2K-box49.12.4e-17931712199
        K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    +L kei    +++R++ GedL+ L+++eLqqLe  Le++lk + ++K++ ++++i+ l  k  +l eenk+L++k++
  Gh_D06G0267  93 NIRLSKEIVDKTHQLRQMRGEDLQGLNIEELQQLEGMLESGLKCVLETKSNRIMNEISSLETKGARLLEENKQLKEKMA 171
                  456777777778899*************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.263161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002654.51E-39275No hitNo description
PRINTSPR004043.4E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-31373IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.15386176IPR002487Transcription factor, K-box
PfamPF014868.9E-1691170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAREKIKIKK IDNLTARQVT FSKRRRGLFK KAEELSVLCD AEVALIIFSA TGKLFEFASS  60
SMKDILGRYN LHSNNINKLG RPSLDLQLEN NNNIRLSKEI VDKTHQLRQM RGEDLQGLNI  120
EELQQLEGML ESGLKCVLET KSNRIMNEIS SLETKGARLL EENKQLKEKM ATLYKRKRDS  180
DVVGEEGVSS ESVTNVCSCS SSCPPLEDDS SDTSLRLGLP FT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-19173173Myocyte-specific enhancer factor 2B
1tqe_Q2e-19173173Myocyte-specific enhancer factor 2B
1tqe_R2e-19173173Myocyte-specific enhancer factor 2B
1tqe_S2e-19173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556320.0KC155632.1 Gossypium hirsutum MADS box protein MADS37 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449317.11e-156PREDICTED: MADS-box protein SVP-like
RefseqXP_012449316.11e-156PREDICTED: MADS-box protein SVP-like
RefseqXP_012449315.11e-156PREDICTED: MADS-box protein SVP-like
RefseqXP_012449314.11e-156PREDICTED: MADS-box protein SVP-like
RefseqXP_012449312.11e-156PREDICTED: MADS-box protein SVP-like
SwissprotQ9FVC13e-94SVP_ARATH; MADS-box protein SVP
TrEMBLA0A0D2SM251e-156A0A0D2SM25_G
TrEMBLU5L2F21e-156U5L2F2_G
STRINGVIT_18s0001g07460.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-83MIKC_MADS family protein